Course Description: Web Tools for MTBC Bioinformatics
The Web Tools for MTBC Bioinformatics course introduces participants to various online bioinformatics tools designed for the analysis of Mycobacterium tuberculosis complex (MTBC) genomes, with a focus on next-generation sequencing (NGS) data. This course is tailored for researchers and students who want to analyze MTBC sequencing data without requiring programming expertise.
Participants will explore key web-based platforms that facilitate MTBC genome analysis, lineage classification, and drug resistance profiling, equipping them with the skills to select and utilize the most suitable tools for their research needs.
What You’ll Learn
- Overview of Web-Based Bioinformatics Tools: Introduction to tools for MTBC genome analysis.
- Key Tools for NGS Data Analysis:
- StrainSeeker: Identifying MTBC strain types.
- Kraken2: Rapid classification of sequencing reads.
- BV-BRC: Comprehensive bacterial genome analysis.
- Mycrobe: Pathogen identification and analysis.
- TB Profiler: Predicting TB drug resistance.
- PhyResSE: Resistance profiling and phylogenetic analysis.
- Advantages and Limitations of each tool for MTBC genome analysis.
- Choosing the Right Software: How to select the best tool for specific research needs.
- Hands-On Training: Running selected software to gain practical experience.
This course enables participants to confidently navigate web-based bioinformatics tools, facilitating accurate and efficient MTBC genome analysis.
Lessons:
